Table 2. Downregulated differentially expressed proteins in Runx3 KO mESCs

Accession Protein name Gene name Sequence coverage [%] KO/WT ratio
Q546G4 Serum albumin Alb 6.2 0.038
E9Q8N1 Titin Ttn 0.1 0.067
Q9JLC8 Sacsin Sacs 0.3 0.11
Q9Z0N2 Eukaryotic translation initiation factor 2 subunit 3, Y-linked Eif2s3y 5.7 0.18
A2AUM9 Centrosomal protein of 152 kDa Cep152 1.2 0.19
Q80WW9 DDRGK domain-containing protein 1 Ddrgk1 18.7 0.20
Q792Z1 MCG140784 Try10 8.1 0.33
P16627 Heat shock 70 kDa protein 1-like Hspa1l 4.5 0.34
Q91ZA3 Propionyl-CoA carboxylase alpha chain, mitochondrial Pcca 3.2 0.35
Q91X91 Nicotinate-nucleotide pyrophosphorylase Qprt 19.1 0.36
Q5FW91 Tubulin alpha-3 chain Tuba3a 7.1 0.37
F6WUX1 Gamma-glutamyltranspeptidase 1 Ggt1 7.2 0.38
A0A087WP24 Alpha/beta hydrolase domain-containing protein 14B Abhd14b 24.6 0.38
Q9DCM0 Protein ETHE1, mitochondrial Ethe1 15.7 0.39
G3UZG5 Kelch domain-containing protein 4 Klhdc4 15.4 0.39
Q9WUL7 ADP-ribosylation factor-like protein 3 Arl3 25.3 0.40
P70278 Stimulated by retinoic acid gene 8 protein Stra8 16 0.41
Q9CQV7 Mitochondrial import inner membrane translocase subunit TIM14 Dnajc19 36.2 0.41
D6RJ50 Presenilins-associated rhomboid-like protein, mitochondrial Parl 14 0.41
Q9WUJ8 Origin recognition complex subunit 6 Orc6 8.4 0.43
G3UVU9 Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 Jmjd6 10.7 0.43
Q9ERD7 Tubulin beta-3 chain Tubb3 9.1 0.45
Q9CXL3 Uncharacterized protein C7orf50 homolog 32.8 0.46
A2A4P0 ATP-dependent RNA helicase DHX8 Dhx8 1.5 0.46
Q3UY34 Uncharacterized protein C12orf43 homolog 2210016L21Rik 9.8 0.46
A0A0G2JFF9 HCLS1-associated protein X-1 Hax1 14.6 0.47
Q99K85 Phosphoserine aminotransferase Psat1 44.1 0.47
Q99JT9 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase Adi1 31.8 0.47
Q80W37 Snurportin-1 Snupn 5.3 0.48
P43883 Perilipin-2 Plin2 30.6 0.48
E9Q7S1 Zinc finger protein 106 Zfp106 2.3 0.49
Q9Z127 Large neutral amino acids transporter small subunit 1 Slc7a5 13.5 0.49
Q3TCH7 Cullin-4A Cul4a 2.8 0.49
Q9CYN9 Renin receptor Atp6ap2 4.6 0.49
Q9ESW8 Pyroglutamyl-peptidase 1 Pgpep1 13.4 0.49
Q9DB34 Charged multivesicular body protein 2a Chmp2a 28.4 0.50
Q922H2 [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3, mitochondrial Pdk3 6.5 0.50
Q923D2 Flavin reductase (NADPH) Blvrb 37.4 0.50
KO, knockout; mESC, mouse embryonic stem cells; KO/WT, knockout to wild-type ratio.