Table 2.
Information on primers and restriction enzymes for PCR-RFLP
Primer Name | Sequence (5' to 3') | Tm (°C) | Product Size (bp) | Restriction Enzyme | Ref. |
GBP1_F | GGATAACACTTCGGTAACTTGC | 58 | 587 | Bsu36I | [11] |
GBP1_R | GAAGGGGAAACTGAGACACAAT |
GBP2_F | ACGGGAACTCCGAAGCAACT | 60 | 325 | Ssp I | [11] |
GBP2_R | CAAGGGCTTTCCCACTGTCC |
CD163_F | GACCTGGACTATTGAATGGC | 53 | 139 | Fnu4h I | [21] |
CD163_R | CATACAACTTTGAGTAGTCACTTC |
CD169_F | CGGCTGCTGTAGCTCTGATTG | 61 | 530 | Hinp1 I | [21] |
CD169_R | GCCTTGGCCTGGTTTCCTTA |
Where, “F” and “R” in primer names represent “Forward” and “Reverse”.
Where c.=coding DNA reference sequence; p.=protein reference sequence; [] indicates an allele;
(asterisk)=translation termination (stop) codon. The above polymorphisms were named according to the nomenclature for the description of sequence polymorphisms (http://www.hgvs.org/mutnomen/).