Table 2.
PCR primers and restriction enzymes used for genotyping four SNPs
Gene & SNP | Reference ID | Primer sequences (5’→3’) | Fragment size (bp) | TA (°C) | Restriction Enzyme (°C) | Size (bp) of the allelic polymorphism |
DSP | rs45430738 | CAATGGCGTGACCGATGG | 472 bp | 60°C | Hpy188I | 307, 263, 165 bp |
G>A | TGTGGCTGTGGCGTAGGCT | (37°C) |
RASA2 | rs45431691 | GTGCTAAAACTGCCTAAG | 102 bp | 54°C | MseI | 102, 60 bp |
A>C | AACCCTAGCACTGTATGG | (37°C) |
MYH3 | rs45431421 | CGCCGAAAGCTCACTGTG | 265 bp | 55°C | BslI | 265, 214 bp |
C>A | CTGGGGAGGAACCTGCTG | (55°C) |
GSN | rs45435111 | CGGGAACCTGCAGTATGA | 291 bp | 56°C | EcoRV | 291, 245 bp |
G>A | GGTGGTCTGGTGCGATCA | (37°C) |